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JCAMD
2010
92views more  JCAMD 2010»
13 years 7 months ago
Ligand docking and binding site analysis with PyMOL and Autodock/Vina
Docking of small molecule compounds into the binding site of a receptor and estimating the binding affinity of the complex is an important part of the structurebased drug design pr...
Daniel Seeliger, Bert L. de Groot
JCAMD
2010
82views more  JCAMD 2010»
13 years 11 months ago
Making priors a priority
When we build a predictive model of a drug property we rigorously assess its predictive accuracy, but we are rarely able to address the most important question, “How useful will...
Matthew Segall, Andrew Chadwick
JCAMD
2010
52views more  JCAMD 2010»
13 years 11 months ago
The SAMPL2 blind prediction challenge: introduction and overview
Matthew T. Geballe, A. Geoffrey Skillman, Anthony ...
JCAMD
2010
65views more  JCAMD 2010»
13 years 11 months ago
Analysis of SM8 and Zap TK calculations and their geometric sensitivity
Abstract A prospective study of aqueous solvation energies was done using the SM8 and Zap TK models for a variety of geometries. CM4M charges calculated with M06 and M06-2X were fo...
Benjamin A. Ellingson, A. Geoffrey Skillman, Antho...
JCAMD
2010
34views more  JCAMD 2010»
13 years 11 months ago
SAMPL2 and continuum modeling
An account is given of our contributions to the SAMPL2 challenge for vacuum-water transfer energies. These contributions include different charge sets and radii used with Poissonâ€...
Anthony Nicholls, Stanislaw Wlodek, J. Andrew Gran...