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JCB
2000
105views more  JCB 2000»
13 years 10 months ago
A Greedy Algorithm for Aligning DNA Sequences
For aligning DNA sequences that differ only by sequencing errors, or by equivalent errors from other sources, a greedy algorithm can be much faster than traditional dynamic progra...
Zheng Zhang 0004, Scott Schwartz, Lukas Wagner, We...
JCB
2000
61views more  JCB 2000»
13 years 10 months ago
Estimation of the Mutation Rate During Error-prone Polymerase Chain Reaction
Dai Wang, Cheng Zhao, Rong Cheng, Fengzhu Sun
JCB
2000
90views more  JCB 2000»
13 years 10 months ago
Geometric Invariant Core for the CL and CH1 Domains of Immunoglobulin Molecules
A previously developed algorithmic method for identifying a geometric invariant of protein structures, termed geometrical core, is extended to the and 1 domains of immunoglobulin ...
Ognyan Stoyanov, Alexander Kister, Israel Gelfand,...
JCB
2000
146views more  JCB 2000»
13 years 10 months ago
Bayesian Segmentation of Protein Secondary Structure
We present a novel method for predicting the secondary structure of a protein from its amino acid sequence. Most existing methods predict each position in turn based on a local wi...
Scott C. Schmidler, Jun S. Liu, Douglas L. Brutlag
JCB
2000
75views more  JCB 2000»
13 years 10 months ago
A Bayesian Model for Detecting Past Recombination Events in DNA Multiple Alignments
Gráinne McGuire, Frank Wright, Michael J. P...
JCB
2000
87views more  JCB 2000»
13 years 10 months ago
Comparison of Additive Trees Using Circular Orders
It has been postulated that existing species have been linked in the past in a way that can be described using an additive tree structure. Any such tree structure reflecting speci...
Vladimir Makarenkov, Bruno Leclerc
JCB
2000
68views more  JCB 2000»
13 years 10 months ago
Analysis of Variance for Gene Expression Microarray Data
M. Kathleen Kerr, Mitchell Martin, Gary A. Churchi...
JCB
2000
69views more  JCB 2000»
13 years 10 months ago
An Algorithm Combining Discrete and Continuous Methods for Optical Mapping
Richard M. Karp, Itsik Pe'er, Ron Shamir
JCB
2000
107views more  JCB 2000»
13 years 10 months ago
A Discriminative Framework for Detecting Remote Protein Homologies
A new method for detecting remote protein homologies is introduced and shown to perform well in classifying protein domains by SCOP superfamily. The method is a variant of support...
Tommi Jaakkola, Mark Diekhans, David Haussler