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    JCB
    2008
    82views more  JCB 2008»
    Determining Nucleolar Association from Sequence by Leveraging Protein-Protein Interactions
    13 years 10 months ago
    Determining Nucleolar Association from Sequence by Leveraging Protein-Protein Interactions
    Download  archive.itee.uq.edu.au
    Controlled intra-nuclear organisation of proteins is critical for sustaining correct function of the cell. Proteins and RNA are transported by passive diffusion and associate with...
    Mikael Bodén, Rohan D. Teasdale
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    JCB
    2008
    111views more  JCB 2008»
    Sorting Genomes with Centromeres by Translocations
    13 years 11 months ago
    Sorting Genomes with Centromeres by Translocations
    Download  acgt.cs.tau.ac.il
    A centromere is a special region in the chromosome that plays a vital role during cell division. Every new chromosome created by a genome rearrangement event must have a centromer...
    Michal Ozery-Flato, Ron Shamir
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    JCB
    2008
    82views more  JCB 2008»
    Assessing the Exceptionality of Network Motifs
    13 years 11 months ago
    Assessing the Exceptionality of Network Motifs
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    Franck Picard, Jean-Jacques Daudin, Michel Koskas,...
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    JCB
    2008
    159views more  JCB 2008»
    BayesMD: Flexible Biological Modeling for Motif Discovery
    13 years 11 months ago
    BayesMD: Flexible Biological Modeling for Motif Discovery
    Download  eprints.pascal-network.org
    We present BayesMD, a Bayesian Motif Discovery model with several new features. Three different types of biological a priori knowledge are built into the framework in a modular fa...
    Man-Hung Eric Tang, Anders Krogh, Ole Winther
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    JCB
    2008
    75views more  JCB 2008»
    New, Improved, and Practical k-Stem Sequence Similarity Measures for Probe Design
    13 years 11 months ago
    New, Improved, and Practical k-Stem Sequence Similarity Measures for Probe Design
    Download  algorithmics.molgen.mpg.de
    We define new measures of sequence similarity for oligonucleotide probe design. These new measures incorporate the nearest neighbor k-stem motifs in their definition, but can be e...
    Anthony J. Macula, Alexander Schliep, Morgan A. Bi...
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    JCB
    2008
    73views more  JCB 2008»
    Computation-Based Discovery of Cis-Regulatory Modules by Hidden Markov Model
    13 years 11 months ago
    Computation-Based Discovery of Cis-Regulatory Modules by Hidden Markov Model
    Download  www.stat.purdue.edu
    Jing Wu, Jun Xie
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    JCB
    2008
    81views more  JCB 2008»
    Estimating the Ancestral Recombinations Graph (ARG) as Compatible Networks of SNP Patterns
    13 years 11 months ago
    Estimating the Ancestral Recombinations Graph (ARG) as Compatible Networks of SNP Patterns
    Download  www.icb.ufmg.br
    Traditionally nonrecombinant genome, i.e., mtDNA or Y chromosome, has been used for phylogeography, notably for ease of analysis. The topology of the phylogeny structure in this c...
    Laxmi Parida, Marta Melé, Francesc Calafell...
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    JCB
    2008
    75views more  JCB 2008»
    Reconciliation with Non-Binary Species Trees
    13 years 11 months ago
    Reconciliation with Non-Binary Species Trees
    Download  www-2.cs.cmu.edu
    Benjamin Vernot, Maureen Stolzer, Aiton Goldman, D...
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    JCB
    2008
    69views more  JCB 2008»
    Gene Family Evolution by Duplication, Speciation, and Loss
    13 years 11 months ago
    Gene Family Evolution by Duplication, Speciation, and Loss
    Download  www.cecm.sfu.ca
    Cedric Chauve, Jean-Philippe Doyon, Nadia El-Mabro...
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    JCB
    2008
    81views more  JCB 2008»
    New Constructions of One- and Two-Stage Pooling Designs
    13 years 11 months ago
    New Constructions of One- and Two-Stage Pooling Designs
    Download  jupiter.math.nctu.edu.tw
    The study of gene functions requires a DNA library of high quality, such a library is obtained from a large mount of testing and screening. Pooling design is a very helpful tool f...
    Yongxi Cheng, Ding-Zhu Du
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