Sciweavers

RECOMB
1997
Springer
14 years 3 months ago
A more efficient approximation scheme for tree alignment
We present a new polynomial time approximation scheme (PTAS) for tree alignment, which is an important variant of multiple sequence alignment. As in the existing PTASs in the liter...
Lusheng Wang, Tao Jiang, Dan Gusfield
RECOMB
1997
Springer
14 years 3 months ago
Pooling strategies for establishing physical genome maps using FISH
Fengzhu Sun, Gary Benson, Norman Arnheim, Michael ...
RECOMB
1997
Springer
14 years 3 months ago
A branch-and-cut algorithm for multiple sequence alignment
Multiple sequence alignment is an important problem in computational biology. We study the Maximum Trace formulation introduced by Kececioglu [?]. We first phrase the problem in ...
Knut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kur...
RECOMB
1997
Springer
14 years 3 months ago
Progressive multiple alignment with constraints
A progressive alignment algorithm produces a multi-alignment of a set of sequences by repeatedly aligning pairs of sequences and/or previously generated alignments. We describe a ...
Gene Myers, Sanford Selznick, Zheng Zhang 0004, We...
RECOMB
1997
Springer
14 years 3 months ago
On the complexity and approximation of syntenic distance
The paper studies the computational complexity and approximation algorithms for a new evolutionary distance between multi-chromosomal genomes introduced recently by Ferretti, Nade...
Bhaskar DasGupta, Tao Jiang, Sampath Kannan, Ming ...
RECOMB
1997
Springer
14 years 3 months ago
Sequence alignment with tandem duplication
Algorithm development for comparing and aligning biological sequences has, until recently, been based on the SI model of mutational events which assumes that modi cation of sequen...
Gary Benson