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IPPS
2010
IEEE
13 years 10 months ago
Fast Smith-Waterman hardware implementation
The Smith-Waterman (SW) algorithm is one of the widely used algorithms for sequence alignment in computational biology. With the growing size of the sequence database, there is alw...
Zubair Nawaz, Koen Bertels, Huseyin Ekin Sumbul
IPPS
2009
IEEE
14 years 7 months ago
Flexible pipelining design for recursive variable expansion
Many image and signal processing kernels can be optimized for performance consuming a reasonable area by doing loops parallelization with extensive use of pipelining. This paper p...
Zubair Nawaz, Thomas Marconi, Koen Bertels, Todor ...