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    SIAMSC
    2008
    131views more  SIAMSC 2008»
    Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces
    13 years 11 months ago
    Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces
    Download  papers.cnl.salk.edu
    Many important physiological processes operate at time and space scales far beyond those accessible to atom-realistic simulations, and yet discrete stochastic rather than continuum...
    Rex A. Kerr, Thomas M. Bartol, Boris Kaminsky, Mar...
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    SIAMSC
    2008
    149views more  SIAMSC 2008»
    Adaptive Discrete Galerkin Methods Applied to the Chemical Master Equation
    13 years 11 months ago
    Adaptive Discrete Galerkin Methods Applied to the Chemical Master Equation
    Download  www.hamilton.ie
    In systems biology, the stochastic description of biochemical reaction kinetics is increasingly being employed to model gene regulatory networks and signalling pathways. Mathematic...
    Peter Deuflhard, Wilhelm Huisinga, T. Jahnke, Mich...
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    SIAMSC
    2008
    99views more  SIAMSC 2008»
    Mixed Multiscale Finite Element Methods for Stochastic Porous Media Flows
    13 years 11 months ago
    Mixed Multiscale Finite Element Methods for Stochastic Porous Media Flows
    Download  www.sintef.no
    In this paper, we propose a stochastic mixed multiscale finite element method. The proposed method solves the stochastic porous media flow equation on the coarse grid using a set ...
    J. E. Aarnes, Yalchin Efendiev
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    SIAMSC
    2008
    182views more  SIAMSC 2008»
    A Distributed SDP Approach for Large-Scale Noisy Anchor-Free Graph Realization with Applications to Molecular Conformation
    13 years 11 months ago
    A Distributed SDP Approach for Large-Scale Noisy Anchor-Free Graph Realization with Applications to Molecular Conformation
    Download  www.math.nus.edu.sg
    We propose a distributed algorithm for solving Euclidean metric realization problems arising from large 3D graphs, using only noisy distance information, and without any prior kno...
    Pratik Biswas, Kim-Chuan Toh, Yinyu Ye
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    SIAMSC
    2008
    165views more  SIAMSC 2008»
    Iterated Hard Shrinkage for Minimization Problems with Sparsity Constraints
    13 years 11 months ago
    Iterated Hard Shrinkage for Minimization Problems with Sparsity Constraints
    Download  www.math.uni-bremen.de
    Abstract. A new iterative algorithm for the solution of minimization problems in infinitedimensional Hilbert spaces which involve sparsity constraints in form of p-penalties is pro...
    Kristian Bredies, Dirk A. Lorenz
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    SIAMSC
    2008
    129views more  SIAMSC 2008»
    Iterative Solution of Piecewise Linear Systems
    13 years 11 months ago
    Iterative Solution of Piecewise Linear Systems
    Download  web.math.unifi.it
    The correct formulation of numerical models for free-surface hydrodynamics often requires the solution of special linear systems whose coefficient matrix is a piecewise constant fu...
    Luigi Brugnano, Vincenzo Casulli
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    SIAMSC
    2008
    127views more  SIAMSC 2008»
    On Diagonally Relaxed Orthogonal Projection Methods
    13 years 11 months ago
    On Diagonally Relaxed Orthogonal Projection Methods
    Download  math.haifa.ac.il
    Abstract. We propose and study a block-iterative projections method for solving linear equations and/or inequalities. The method allows diagonal component-wise relaxation in conjun...
    Yair Censor, Tommy Elfving, Gabor T. Herman, Toura...
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    SIAMSC
    2008
    104views more  SIAMSC 2008»
    Deblurring Methods Using Antireflective Boundary Conditions
    13 years 11 months ago
    Deblurring Methods Using Antireflective Boundary Conditions
    Download  www.numerik.mathematik.uni-mainz.de
    In this note we consider the numerical solution of selfadjoint deblurring problems on bounded intervals. For these problems it has recently been shown that appropriate modelling of...
    Martin Christiansen, Martin Hanke
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    SIAMSC
    2008
    126views more  SIAMSC 2008»
    Highly Efficient Strong Stability-Preserving Runge-Kutta Methods with Low-Storage Implementations
    13 years 11 months ago
    Highly Efficient Strong Stability-Preserving Runge-Kutta Methods with Low-Storage Implementations
    Download  www.amath.washington.edu
    Strong stability-preserving (SSP) Runge
    David I. Ketcheson
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    SIAMSC
    2008
    159views more  SIAMSC 2008»
    Hierarchical Clustering of Massive, High Dimensional Data Sets by Exploiting Ultrametric Embedding
    13 years 11 months ago
    Hierarchical Clustering of Massive, High Dimensional Data Sets by Exploiting Ultrametric Embedding
    Download  www.cs.rhul.ac.uk
    Coding of data, usually upstream of data analysis, has crucial implications for the data analysis results. By modifying the data coding
    Fionn Murtagh, Geoff Downs, Pedro Contreras
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