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CONCURRENCY
2010
130views more  CONCURRENCY 2010»
13 years 11 months ago
Enabling high-speed asynchronous data extraction and transfer using DART
As the complexity and scale of current scientific and engineering applications grow, managing and transporting the large amounts of data they generate is quickly becoming a signif...
Ciprian Docan, Manish Parashar, Scott Klasky
CMPB
2010
109views more  CMPB 2010»
13 years 11 months ago
Cell Accelerated Cryoablation Simulation
Abstract. Tracking growth of lethal ice is critical to success of percutaneous ablations using supercooled probes introduced into cancerous lesions. Physicians lack planning tools ...
Daniel J. Blezek, David G. Carlson, Lionel T. Chen...
BMCBI
2010
149views more  BMCBI 2010»
13 years 11 months ago
RuleMonkey: software for stochastic simulation of rule-based models
Background: The system-level dynamics of many molecular interactions, particularly protein-protein interactions, can be conveniently represented using reaction rules, which can be...
Joshua Colvin, Michael I. Monine, Ryan N. Gutenkun...
BMCBI
2008
111views more  BMCBI 2008»
13 years 11 months ago
GENOMEPOP: A program to simulate genomes in populations
Background: There are several situations in population biology research where simulating DNA sequences is useful. Simulation of biological populations under different evolutionary...
Antonio Carvajal-Rodríguez
BMCBI
2010
62views more  BMCBI 2010»
13 years 11 months ago
Forward-time simulation of realistic samples for genome-wide association studies
Background: Forward-time simulations have unique advantages in power and flexibility for the simulation of genetic samples of complex human diseases because they can closely mimic...
Bo Peng, Christopher I. Amos
ALIFE
2007
13 years 11 months ago
Life Cycle of a Minimal Protocell - A Dissipative Particle Dynamics Study
Cross-reactions and other systematic difficulties generated by the coupling of functional chemical subsystems pose the largest challenge for assembling a viable protocell in the la...
Harold Fellermann, Steen Rasmussen, Hans-Joachim Z...
AES
2008
Springer
182views Cryptology» more  AES 2008»
13 years 11 months ago
Logical product models for automated scripting of process-level construction animations
Animation can add significant value to Discrete-Event Simulation by helping verify, validate, and accredit simulation analyses. This is particularly true in construction where typ...
Vineet R. Kamat
ICECCS
2010
IEEE
188views Hardware» more  ICECCS 2010»
13 years 11 months ago
A Transactional Architecture for Simulation
Abstract—We are developing a concurrent, agent-based approach to complex systems simulation as part of the CoSMoS project. In such simulations an agent’s behaviour can typicall...
Tim Hoverd, Adam T. Sampson
CONCUR
2010
Springer
13 years 11 months ago
Conditional Automata: A Tool for Safe Removal of Negligible Events
Abstract. Polynomially accurate simulations [19] are relations for Probabilistic Automata that require transitions to be matched up to negligible sets provided that computation len...
Roberto Segala, Andrea Turrini
HPDC
2010
IEEE
14 years 19 days ago
LogGOPSim: simulating large-scale applications in the LogGOPS model
We introduce LogGOPSim--a fast simulation framework for parallel algorithms at large-scale. LogGOPSim utilizes a slightly extended version of the well-known LogGPS model in combin...
Torsten Hoefler, Timo Schneider, Andrew Lumsdaine