WABI
2005
Springer
14 years 4 months ago
2005
Springer
Motifs in a network are small connected subnetworks that occur in significantly higher frequencies than in random networks. They have recently gathered much attention as a useful ...
WABI
2005
Springer
14 years 4 months ago
2005
Springer
Abstract. In this paper, we use integer programming approach for solving a hard combinatorial optimization problem, namely protein threading. For this sequence-to-structure alignme...
WABI
2005
Springer
14 years 4 months ago
2005
Springer
d Abstract] Tamir Tuller , Efrat Oron , Erez Makavy , Daniel A. Chamovitz † , and Benny Chor ‡ Tel-Aviv University, Tel-Aviv 69978, Israel. Abstract. We study gene expression d...
WABI
2005
Springer
14 years 4 months ago
2005
Springer
Recently, there has been growing interest in the modelling and simulation of biological systems. Such systems are often modelled in terms of coupled ordinary differential equation...
WABI
2005
Springer
14 years 4 months ago
2005
Springer
Abstract. With the invention of biotechnological high throughput methods like DNA microarrays, biologists are capable of producing huge amounts of data. During the analysis of such...
WABI
2005
Springer
2005
Springer
Algorithms for Imperfect Phylogeny Haplotyping (IPPH) with a Single Homoplasy or Recombination Event
14 years 4 months ago
Abstract. The haplotype inference (HI) problem is the problem of inferring 2n haplotype pairs from n observed genotype vectors. This is a key problem that arises in studying geneti...
WABI
2005
Springer
14 years 4 months ago
2005
Springer
Abstract. Traditional sequence comparison by alignment applies a mutation model comprising two events, substitutions and indels (insertions or deletions) of single positions (SI). ...
WABI
2005
Springer
14 years 4 months ago
2005
Springer
Abstract Baharak Rastegari and Anne Condon Department of Computer Science, University of British Columbia Abstract. Accurate prediction of pseudoknotted RNA secondary structure is ...
WABI
2005
Springer
14 years 4 months ago
2005
Springer
We give a new algorithm for the genotype phasing problem. Our solution is based on a hidden Markov model for haplotypes. The model has a uniform structure, unlike most solutions pr...
WABI
2005
Springer
14 years 4 months ago
2005
Springer
Recombination plays an important role in creating genetic diversity within species, and inferring past recombination events is central to many problems in genetics. Given a set M o...