BIOINFORMATICS 2016

Teaser Browsing | Click Here

Title Browsing | Click Here

Wall of Fame | Most Viewed BIOINFORMATICS-2016 Paper

click to vote

BIOINFORMATICS
2016

136views more BIOINFORMATICS 2016»

De novo identification of replication-timing domains in the human genome by deep learning

8 years 8 months ago

Download bioinformatics.oxfordjournals.org

Motivation: The de novo identiﬁcation of the initiation and termination zones—regions that replicate earlier or later than their upstream and downstream neighbours, respective...

Feng Liu, Chao Ren, Hao Li, Pingkun Zhou, Xiaochen...

claim paper

Read More »

Disclaimer and Copyright Notice

Sciweavers respects the rights of all copyright holders and in this regard, authors are only allowed to share a link to their preprint paper on their own website. Every contribution is associated with a desciptive image. It is the sole responsibility of the authors to ensure that their posted image is not copyright infringing. This service is compliant with IEEE copyright.

Id	Views	Title	Status

1	136	De novo identification of replication-timing domains in the human genome by deep learning	claim
2	114	Accurate estimation of isoelectric point of protein and peptide based on amino acid sequences	claim
3	113	Gapped sequence alignment using artificial neural networks: application to the MHC class I system	claim
4	111	Large-scale extraction of gene interactions from full-text literature using DeepDive	claim
5	109	NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles	claim
6	105	JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison	claim
7	99	Identification of coupling DNA motif pairs on long-range chromatin interactions in human K562 cells	claim
8	99	catRAPID signature: identification of ribonucleoproteins and RNA-binding regions	claim
9	99	Analyzing synergistic and non-synergistic interactions in signalling pathways using Boolean Nested Effect Models	claim
10	97	IsoMIF Finder: online detection of binding site molecular interaction field similarities	claim
11	96	Exploring peptide/MHC detachment processes using hierarchical natural move Monte Carlo	claim
12	93	A multi-objective optimization approach accurately resolves protein domain architectures	claim
13	93	openBIS ELN-LIMS: an open-source database for academic laboratories	claim
14	93	XLmap: an R package to visualize and score protein structure models based on sites of protein cross-linking	claim
15	92	Improved large-scale prediction of growth inhibition patterns using the NCI60 cancer cell line panel	claim
16	92	CLAMMS: a scalable algorithm for calling common and rare copy number variants from exome sequencing data	claim
17	91	DARA: a web server for rapid search of structural neighbours using solution small angle X-ray scattering data	claim
18	90	Component-wise gradient boosting and false discovery control in survival analysis with high-dimensional covariates	claim
19	86	Using de novo protein structure predictions to measure the quality of very large multiple sequence alignments	claim
20	85	cl-dash: rapid configuration and deployment of Hadoop clusters for bioinformatics research in the cloud	claim
21	85	LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor	claim
22	84	FoCuS-point: software for STED fluorescence correlation and time-gated single photon counting	claim
23	84	CLUSTERnGO: a user-defined modelling platform for two-stage clustering of time-series data	claim
24	84	MT-HESS: an efficient Bayesian approach for simultaneous association detection in OMICS datasets, with application to eQTL mapping in multiple tissues	claim
25	83	regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests	claim
26	81	HEALER: homomorphic computation of ExAct Logistic rEgRession for secure rare disease variants analysis in GWAS	claim
27	81	Probabilistic models of genetic variation in structured populations applied to global human studies	claim
28	80	EMDomics: a robust and powerful method for the identification of genes differentially expressed between heterogeneous classes	claim
29	80	Optimal design of gene knockout experiments for gene regulatory network inference	claim
30	77	Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization	claim
31	74	SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data	claim
32	70	An algorithm for automated layout of process description maps drawn in SBGN	claim
33	68	No Promoter Left Behind (NPLB): learn de novo promoter architectures from genome-wide transcription start sites	claim
34	60	Inferred miRNA activity identifies miRNA-mediated regulatory networks underlying multiple cancers	claim
35	53	Comparison of genetic variants in matched samples using thesaurus annotation	claim
36	51	SHAPE directed RNA folding	claim
37	50	MIEC-SVM: automated pipeline for protein peptide/ligand interaction prediction	claim
38	50	GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding	claim
39	50	RNF: a general framework to evaluate NGS read mappers	claim
40	47	PHYLUCE is a software package for the analysis of conserved genomic loci	claim

Sciweavers

Explore & Download

Productivity Tools

Document Tools

Image Tools

Sciweavers