RECOMB 2004 - PDF Preprint Papers

RECOMB 2004 Annual Conference on Research in Computational Molecular Biology

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RECOMB
2004
Springer

276views Computational Biology» more RECOMB 2004»

Genome Rearrangement in Mitochondria and Its Computational Biology

14 years 4 months ago

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István Miklós, Jotun Hein

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Id	Views	Title	Status

1	276	Genome Rearrangement in Mitochondria and Its Computational Biology	claim
2	228	Perfect phylogeny and haplotype assignment	claim
3	197	Modeling and Analysis of Heterogeneous Regulation in Biological Networks	claim
4	187	Comparing in situ mRNA expression patterns of drosophila embryos	claim
5	182	Computational identification of evolutionarily conserved exons	claim
6	168	Mining protein family specific residue packing patterns from protein structure graphs	claim
7	166	Learning Regulatory Network Models that Represent Regulator States and Roles	claim
8	163	Application of Kernel Method to Reveal Subtypes of TF Binding Motifs	claim
9	160	Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response	claim
10	155	A class of edit kernels for SVMs to predict translation initiation sites in eukaryotic mRNAs	claim
11	151	The Statistical Significance of Max-Gap Clusters	claim
12	147	Probabilistic discovery of overlapping cellular processes and their regulation	claim
13	145	Conservation of Combinatorial Structures in Evolution Scenarios	claim
14	144	A random graph approach to NMR sequential assignment	claim
15	144	A discriminative model for identifying spatial cis-regulatory modules	claim
16	144	Designing multiple simultaneous seeds for DNA similarity search	claim
17	143	Finding approximate tandem repeats in genomic sequences	claim
18	140	Multiple Genome Alignment by Clustering Pairwise Matches	claim
19	139	Aligning alignments exactly	claim
20	138	Finding short DNA motifs using permuted markov models	claim
21	137	Chromosomal breakpoint re-use in the inference of genome sequence rearrangement	claim
22	137	De novo repeat classification and fragment assembly	claim
23	132	The evolutionary capacity of protein structures	claim
24	130	Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution	claim
25	130	Using motion planning to study RNA folding kinetics	claim
26	125	The Distribution of Inversion Lengths in Bacteria	claim
27	125	Maximum likelihood resolution of multi-block genotypes	claim
28	125	Somatic evolution of cancer	claim
29	124	From profiles to patterns and back again: a branch and bound algorithm for finding near optimal motif profiles	claim
30	120	Discovering temporal relations in molecular pathways using protein-protein interactions	claim
31	118	An exact solution for finding minimum recombinant haplotype configurations on pedigrees with missing data by integer linear programming	claim
32	118	Stochastic models inspired by hybridization theory for short oligonucleotide arrays	claim
33	116	Multiple organism gene finding by collapsed gibbs sampling	claim
34	115	A novel ensemble-based scoring and search algorithm for protein redesign, and its application to modify the substrate specificity of the gramicidin synthetase a phenylalanine adenylation enzym	claim
35	115	Structured motifs search	claim
36	114	Finding anchors for genomic sequence comparison	claim
37	112	Reconciliation problems for duplication, loss and horizontal gene transfer	claim
38	111	Estimators of Translocations and Inversions in Comparative Maps	claim
39	111	Faster genome annotation of non-coding RNA families without loss of accuracy	claim
40	107	Interface surfaces for protein-protein complexes	claim
41	107	Reconstructing reticulate evolution in species: theory and practice	claim
42	103	Learning multiple evolutionary pathways from cross-sectional data	claim
43	102	Identifying conserved gene clusters in the presence of orthologous groups	claim
44	94	Protein similarity from knot theory and geometric convolution	claim
45	88	Simultaneous identification of duplications and lateral transfers	claim

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