Fast Search Algorithms for Position Specific Scoring Matrices

Fast search algorithms for finding good instances of patterns given as position specific scoring matrices are developed, and some empirical results on their performance on DNA sequences are reported. The algorithms basically generalize the Aho

• Type: Conference
• Year: 2007
• Where: BIRD
• Authors: Cinzia Pizzi, Pasi Rastas, Esko Ukkonen
• Keywords: Algorithms, Bioinformatics, BIRD 2007, Search Algorithms, Specific Scoring Matrices