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BIBE
2004
IEEE

Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds

14 years 2 months ago
Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds
Biologists highly rely on good algorithms for finding homologous regions in bimolecular sequences. An advanced homology search program named PatternHunter has recently been developed. Unlike the well-known program BLAST using a consecutive model, it utilizes a spaced seed model to attain higher sensitivity. We have developed a new program, which extends PatternHunter from a single spaced model to a multiple spaced model. In this paper, we describe methods for finding optimal single and multiple spaced models.
I-Hsuan Yang, Sheng-Ho Wang, Yang-Ho Chen, Pao-Hsi
Added 20 Aug 2010
Updated 20 Aug 2010
Type Conference
Year 2004
Where BIBE
Authors I-Hsuan Yang, Sheng-Ho Wang, Yang-Ho Chen, Pao-Hsian Huang, Liang Ye, Xiaoqiu Huang, Kun-Mao Chao
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