Multi-task learning for cross-platform siRNA efficacy prediction: an in-silico study

Background: Gene silencing using exogenous small interfering RNAs (siRNAs) is now a widespread molecular tool for gene functional study and new-drug target identification. The key mechanism in this technique is to design efficient siRNAs that incorporated into the RNA-induced silencing complexes (RISC) to bind and interact with the mRNA targets to repress their translations to proteins. Although considerable progress has been made in the computational analysis of siRNA binding efficacy, few joint analysis of different RNAi experiments conducted under different experimental scenarios has been done in research so far, while the joint analysis is an important issue in cross-platform siRNA efficacy prediction. A collective analysis of RNAi mechanisms for different datasets and experimental conditions can often provide new clues on the design of potent siRNAs. Results: An elegant multi-task learning paradigm for cross-platform siRNA efficacy prediction is proposed. Experimental studies wer...

• Type: Journal
• Year: 2010
• Where: BMCBI
• Authors: Qi Liu, Qian Xu, Vincent Wenchen Zheng, Hong Xue, Zhiwei Cao, Qiang Yang
• Keywords: BMCBI 2010, Cross-platform SiRNA Efficacy, SiRNA Binding Efficacy, SiRNA Efficacy Prediction