Sentence Simplification Aids Protein-Protein Interaction Extraction

Accurate systems for extracting ProteinProtein Interactions (PPIs) automatically from biomedical articles can help accelerate biomedical research. Biomedical Informatics researchers are collaborating to provide metaservices and advance the state-of-art in PPI extraction. One problem often neglected by current Natural Language Processing systems is the characteristic complexity of the sentences in biomedical literature. In this paper, we report on the impact that automatic simplification of sentences has on the performance of a state-of-art PPI extraction system, showing a substantial improvement in recall (8%) when the sentence simplification method is applied, without significant impact to precision.

• Type: Journal
• Year: 2010
• Where: CORR
• Authors: Siddhartha Jonnalagadda, Graciela Gonzalez
• Keywords: Biomedical, Biomedical Informatics Researchers, CORR 2010, Education, PPI Extraction