This paper presents a novel application of a semantic annotation system, named Cerno, to analyze research publications in electronic format. Specifically, we address the problem of providing automatic support for authors who need to deal with large volumes of research documents. To this end, we have developed Biblio, a user-friendly tool based on Cerno. The tool directs the user’s attention to the most important elements of the papers and provides assistance by generating automatically a list of references and an annotated bibliography given a collection of published research articles. The tool performance has been evaluated on a set of papers and preliminary evaluation results are promising. The backend of Biblio uses a standard relational database to store the results.