This paper presents an extensive evaluation, on artificial datasets, of EDY, an unsupervised algorithm for automatically synthesizing a Structured Hidden Markov Model (S-HMM) from ...
Background: Expressed sequence tag (EST) collections are composed of a high number of single-pass, redundant, partial sequences, which need to be processed, clustered, and annotat...
XML is suitable for structuring complex data coming from different sources and supported by heterogeneous formats. It allows a flexible formalism capable to represent and store d...
Given a set of Datalog rules, facts, and a query, answers to the query can be inferred bottom-up starting with the facts or top-down starting with the query. For efficiently answe...
Increasingly, scientists have begun to tackle gene functions and other complex regulatory processes by studying organisms at the global scales for various levels of biological org...
Cathy H. Wu, Hongzhan Huang, Anastasia N. Nikolska...