4 search results - page 1 / 1 » A 2-approximation for the preceding-and-crossing structured ... |
JCO
2007
14 years 5 months ago
2007
The 2-interval pattern problem over its various models and restrictions was proposed by Vialette (2004) for the application of RNA secondary structure prediction. We present an O(n...
ESA
2005
Springer
14 years 10 months ago
2005
Springer
We address the problem of approximating the 2-Interval Pattern problem over its various models and restrictions. This problem, which is motivated by RNA secondary structure predict...
ISAAC
2005
Springer
14 years 10 months ago
2005
Springer
Abstract The 2-Interval Pattern problem is to find the largest constrained pattern in a set of 2-intervals. The constrained pattern is a subset of the given 2-intervals such that ...
AAIM
2007
Springer
2007
Springer
Improved Approximation Algorithms for Predicting RNA Secondary Structures with Arbitrary Pseudoknots
14 years 11 months ago
We study three closely related problems motivated by the prediction of RNA secondary structures with arbitrary pseudoknots: the MAXIMUM BASE PAIR STACKINGS problem proposed by Ieon...