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BMCBI
2007
109views more  BMCBI 2007»
13 years 8 months ago
Computational RNA secondary structure design: empirical complexity and improved methods
Background: We investigate the empirical complexity of the RNA secondary structure design problem, that is, the scaling of the typical difficulty of the design task for various cl...
Rosalía Aguirre-Hernández, Holger H....
STOC
2009
ACM
159views Algorithms» more  STOC 2009»
14 years 8 months ago
Message passing algorithms and improved LP decoding
Linear programming decoding for low-density parity check codes (and related domains such as compressed sensing) has received increased attention over recent years because of its p...
Sanjeev Arora, Constantinos Daskalakis, David Steu...
CORR
2011
Springer
241views Education» more  CORR 2011»
13 years 2 months ago
An Alternating Direction Algorithm for Matrix Completion with Nonnegative Factors
This paper introduces a novel algorithm for the nonnegative matrix factorization and completion problem, which aims to find nonnegative matrices X and Y from a subset of entries o...
Yangyang Xu, Wotao Yin, Zaiwen Wen, Yin Zhang
CCE
2004
13 years 7 months ago
Improving convergence of the stochastic decomposition algorithm by using an efficient sampling technique
This work focuses on the basic stochastic decomposition (SD) algorithm of Higle and Sen [J.L. Higle, S. Sen, Stochastic Decomposition, Kluwer Academic Publishers, 1996] for two-st...
José María Ponce-Ortega, Vicente Ric...
RECOMB
2008
Springer
14 years 8 months ago
Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins
Abstract. In engineering protein variants by constructing and screening combinatorial libraries of chimeric proteins, two complementary and competing goals are desired: the new pro...
Wei Zheng, Alan M. Friedman, Chris Bailey-Kellogg