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BMCBI
2010
88views more  BMCBI 2010»
13 years 7 months ago
Robust probabilistic superposition and comparison of protein structures
Background: Protein structure comparison is a central issue in structural bioinformatics. The standard dissimilarity measure for protein structures is the root mean square deviati...
Martin Mechelke, Michael Habeck
BMCBI
2007
136views more  BMCBI 2007»
13 years 7 months ago
Comparison of protein structures by growing neighborhood alignments
Background: Design of protein structure comparison algorithm is an important research issue, having far reaching implications. In this article, we describe a protein structure com...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
ICSM
2005
IEEE
14 years 29 days ago
Comparison of Clustering Algorithms in the Context of Software Evolution
To aid software analysis and maintenance tasks, a number of software clustering algorithms have been proposed to automatically partition a software system into meaningful subsyste...
Jingwei Wu, Ahmed E. Hassan, Richard C. Holt
ISMB
1997
13 years 8 months ago
Hierarchical Protein Structure Superposition Using Both Secondary Structure and Atomic Representations
The structural comparison of proteins has become increasingly important as a means to identify protein motifs and fold families. In this paper we present a new algorithm for the c...
Amit Pal Singh, Douglas L. Brutlag
SIGMOD
2008
ACM
122views Database» more  SIGMOD 2008»
14 years 7 months ago
Building query optimizers for information extraction: the SQoUT project
Text documents often embed data that is structured in nature. This structured data is increasingly exposed using information extraction systems, which generate structured relation...
Alpa Jain, Panagiotis G. Ipeirotis, Luis Gravano