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BMCBI
2010
189views more  BMCBI 2010»
13 years 8 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
BMCBI
2005
104views more  BMCBI 2005»
13 years 8 months ago
Scoring functions for transcription factor binding site prediction
Background: Transcription factor binding site (TFBS) prediction is a difficult problem, which requires a good scoring function to discriminate between real binding sites and backg...
Markus T. Friberg, Peter von Rohr, Gaston H. Gonne...
PKDD
2010
Springer
188views Data Mining» more  PKDD 2010»
13 years 7 months ago
Semi-supervised Abstraction-Augmented String Kernel for Multi-level Bio-Relation Extraction
ervised Abstraction-Augmented String Kernel for Multi-Level Bio-Relation Extraction Pavel Kuksa1 , Yanjun Qi2 , Bing Bai2 , Ronan Collobert2 , Jason Weston3 , Vladimir Pavlovic1 , ...
Pavel P. Kuksa, Yanjun Qi, Bing Bai, Ronan Collobe...
MM
2010
ACM
158views Multimedia» more  MM 2010»
13 years 6 months ago
Image segmentation with patch-pair density priors
In this paper, we investigate how an unlabeled image corpus can facilitate the segmentation of any given image. A simple yet efficient multi-task joint sparse representation model...
Xiaobai Liu, Jiashi Feng, Shuicheng Yan, Hai Jin
SC
2009
ACM
14 years 3 months ago
Enabling high-fidelity neutron transport simulations on petascale architectures
The UNIC code is being developed as part of the DOE’s Nuclear Energy Advanced Modeling and Simulation (NEAMS) program. UNIC is an unstructured, deterministic neutron transport c...
Dinesh K. Kaushik, Micheal Smith, Allan Wollaber, ...