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BMCBI
2010
202views more  BMCBI 2010»
13 years 9 months ago
NeMo: Network Module identification in Cytoscape
Background: As the size of the known human interactome grows, biologists increasingly rely on computational tools to identify patterns that represent protein complexes and pathway...
Corban G. Rivera, Rachit Vakil, Joel S. Bader
BMCBI
2008
123views more  BMCBI 2008»
13 years 9 months ago
Functional module detection by functional flow pattern mining in protein interaction networks
eraction networks. In this abstract, we extend this approach by mining functional flow patterns for the purpose of detecting small-sized modules for specific functions. Methods Our...
Young-Rae Cho, Lei Shi, Aidong Zhang
BMCBI
2006
143views more  BMCBI 2006»
13 years 9 months ago
IsoSVM - Distinguishing isoforms and paralogs on the protein level
Background: Recent progress in cDNA and EST sequencing is yielding a deluge of sequence data. Like database search results and proteome databases, this data gives rise to inferred...
Michael Spitzer, Stefan Lorkowski, Paul Cullen, Al...
GIS
2008
ACM
14 years 10 months ago
Using tomography for ubiquitous sensing
By embedding sensors in mobile devices, it is possible to exploit the ubiquitous presence of these devices to construct applications for large-scale sensing and monitoring of envi...
Stacy Patterson, Bassam Bamieh, Amr El Abbadi
BIOINFORMATICS
2010
138views more  BIOINFORMATICS 2010»
13 years 9 months ago
Robust unmixing of tumor states in array comparative genomic hybridization data
Motivation: Tumorigenesis is an evolutionary process by which tumor cells acquire sequences of mutations leading to increased growth, invasiveness, and eventually metastasis. It i...
David Tolliver, Charalampos E. Tsourakakis, Ayshwa...