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» A Computational Complexity Theory in Membrane Computing
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CIBCB
2007
IEEE
14 years 1 months ago
Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes
Abstract— This paper presents a parametric model to estimate the DNA-protein binding time using the DNA and protein structures and details of the binding site. To understand the ...
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...
BIBE
2005
IEEE
121views Bioinformatics» more  BIBE 2005»
14 years 29 days ago
RNA Pseudoknot Prediction Using Term Rewriting
RNA plays a critical role in mediating every step of cellular information transfer from genes to functional proteins. Pseudoknots are widely occurring structural motifs found in a...
Xuezheng Fu, Hao Wang, William L. Harrison, Robert...
RTA
2005
Springer
14 years 25 days ago
The Algebra of Equality Proofs
Proofs of equalities may be built from assumptions using proof rules for reflexivity, symmetry, and transitivity. Reflexivity is an axiom proving x=x for any x; symmetry is a 1-p...
Aaron Stump, Li-Yang Tan
COMPGEOM
2004
ACM
14 years 23 days ago
Low-dimensional embedding with extra information
A frequently arising problem in computational geometry is when a physical structure, such as an ad-hoc wireless sensor network or a protein backbone, can measure local information...
Mihai Badoiu, Erik D. Demaine, Mohammad Taghi Haji...
SIGECOM
2004
ACM
165views ECommerce» more  SIGECOM 2004»
14 years 23 days ago
Adaptive limited-supply online auctions
We study a limited-supply online auction problem, in which an auctioneer has k goods to sell and bidders arrive and depart dynamically. We suppose that agent valuations are drawn ...
Mohammad Taghi Hajiaghayi, Robert D. Kleinberg, Da...