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    » A Computational Model for RNA Multiple Structural Alignment.
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    BMCBI
    2008
    122views more  BMCBI 2008»
    Grammar-based distance in progressive multiple sequence alignment
    13 years 9 months ago
    Grammar-based distance in progressive multiple sequence alignment
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    Background: We propose a multiple sequence alignment (MSA) algorithm and compare the alignment-quality and execution-time of the proposed algorithm with that of existing algorithm...
    David J. Russell, Hasan H. Otu, Khalid Sayood
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    JCB
    2006
    126views more  JCB 2006»
    Combinatorics of Saturated Secondary Structures of RNA
    13 years 9 months ago
    Combinatorics of Saturated Secondary Structures of RNA
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    Following Zuker (1986), a saturated secondary structure for a given RNA sequence is a secondary structure such that no base pair can be added without violating the definition of s...
    P. Clote
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    BMCBI
    2007
    163views more  BMCBI 2007»
    Use of genomic DNA control features and predicted operon structure in microarray data analysis: ArrayLeaRNA - a Bayesian approac
    13 years 9 months ago
    Use of genomic DNA control features and predicted operon structure in microarray data analysis: ArrayLeaRNA - a Bayesian approac
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    Background: Microarrays are widely used for the study of gene expression; however deciding on whether observed differences in expression are significant remains a challenge. Resul...
    Carmen Pin, Mark Reuter
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    BMCBI
    2008
    136views more  BMCBI 2008»
    An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptim
    13 years 9 months ago
    An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptim
    Download  www.biomedcentral.com
    Background: RNAmute is an interactive Java application which, given an RNA sequence, calculates the secondary structure of all single point mutations and organizes them into categ...
    Alexander Churkin, Danny Barash
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    BMCBI
    2005
    132views more  BMCBI 2005»
    Kalign - an accurate and fast multiple sequence alignment algorithm
    13 years 9 months ago
    Kalign - an accurate and fast multiple sequence alignment algorithm
    Download  www.biomedcentral.com
    Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
    Timo Lassmann, Erik L. L. Sonnhammer
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