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» A Computational Model for RNA Multiple Structural Alignment.
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BMCBI
2008
176views more  BMCBI 2008»
13 years 9 months ago
H2r: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments
Background: A multiple sequence alignment (MSA) generated for a protein can be used to characterise residues by means of a statistical analysis of single columns. In addition to t...
Rainer Merkl, Matthias Zwick
ICML
2004
IEEE
14 years 9 months ago
A graphical model for protein secondary structure prediction
In this paper, we present a graphical model for protein secondary structure prediction. This model extends segmental semi-Markov models (SSMM) to exploit multiple sequence alignme...
Wei Chu, Zoubin Ghahramani, David L. Wild
BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
14 years 3 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
ICIP
2005
IEEE
14 years 10 months ago
Featureless global alignment of multiple images
The majority of the approaches to the automatic recovery of a panoramic image from a set of partial views are suboptimal in the sense that the input images are aligned, or registe...
Bernardo Esteves Pires, Pedro M. Q. Aguiar
RECOMB
2006
Springer
14 years 9 months ago
A Study of Accessible Motifs and RNA Folding Complexity
mRNA molecules are folded in the cells and therefore many of their substrings may actually be inaccessible to protein and microRNA binding. The need to apply an accessability crite...
Ydo Wexler, Chaya Ben-Zaken Zilberstein, Michal Zi...