RECOMB 2006 - PDF Preprint Papers

RECOMB 2006 Annual Conference on Research in Computational Molecular Biology

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RECOMB
2006
Springer

320views Computational Biology» more RECOMB 2006»

Biological Networks: Comparison, Conservation, and Evolutionary Trees

15 years 22 days ago

Download www.genetics.wustl.edu

Benny Chor, Tamir Tuller

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Id	Views	Title	Status

1	320	Biological Networks: Comparison, Conservation, and Evolutionary Trees	claim
2	227	De Novo Signaling Pathway Predictions Based on Protein-Protein Interaction, Targeted Therapy and Protein Microarray Analysis	claim
3	203	Assessing Significance of Connectivity and Conservation in Protein Interaction Networks	claim
4	202	Efficient Enumeration of Phylogenetically Informative Substrings	claim
5	202	Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes	claim
6	177	Identification and Evaluation of Functional Modules in Gene Co-expression Networks	claim
7	176	A Study of Accessible Motifs and RNA Folding Complexity	claim
8	174	A New Approach to Protein Identification	claim
9	173	Alignment Statistics for Long-Range Correlated Genomic Sequences	claim
10	168	RNA Secondary Structure Prediction Via Energy Density Minimization	claim
11	168	Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions	claim
12	156	New Methods for Detecting Lineage-Specific Selection	claim
13	155	CONTRAlign: Discriminative Training for Protein Sequence Alignment	claim
14	151	Identifiability Issues in Phylogeny-Based Detection of Horizontal Gene Transfer	claim
15	151	Integrated Protein Interaction Networks for 11 Microbes	claim
16	151	Markov Additive Chains and Applications to Fragment Statistics for Peptide Mass Fingerprinting	claim
17	149	A Parsimony Approach to Genome-Wide Ortholog Assignment	claim
18	149	Improving Prediction of Zinc Binding Sites by Modeling the Linkage Between Residues Close in Sequence	claim
19	149	Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes	claim
20	144	Detecting the Dependent Evolution of Biosequences	claim
21	141	An Improved Statistic for Detecting Over-Represented Gene Ontology Annotations in Gene Sets	claim
22	135	Inferring Positional Homologs with Common Intervals of Sequences	claim
23	134	Domain Architecture in Homolog Identification	claim
24	134	Structural Alignment of Pseudoknotted RNA	claim
25	134	Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data	claim
26	134	Simulating Protein Motions with Rigidity Analysis	claim
27	130	Inferring Gene Orders from Gene Maps Using the Breakpoint Distance	claim
28	129	Permutation Filtering: A Novel Concept for Significance Analysis of Large-Scale Genomic Data	claim
29	129	Probabilistic Paths for Protein Complex Inference	claim
30	127	Evolution of Tandemly Repeated Sequences Through Duplication and Inversion	claim
31	121	Algorithms to Distinguish the Role of Gene-Conversion from Single-Crossover Recombination in the Derivation of SNP Sequences in Populations	claim
32	121	A Parameterized Algorithm for Protein Structure Alignment	claim
33	119	A Probabilistic Model for Gene Content Evolution with Duplication, Loss, and Horizontal Transfer	claim
34	117	Maximal Accurate Forests from Distance Matrices	claim
35	115	A Sublinear-Time Randomized Approximation Scheme for the Robinson-Foulds Metric	claim
36	114	Paths and Cycles in Breakpoint Graphs of Random Multichromosomal Genomes	claim
37	114	Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics	claim
38	112	Simple and Fast Inverse Alignment	claim
39	109	A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies	claim
40	102	Sorting by Translocations Via Reversals Theory	claim
41	95	Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation	claim
42	86	Leveraging Information Across HLA Alleles/Supertypes Improves Epitope Prediction	claim

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