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» A Computational Model for RNA Multiple Structural Alignment.
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BMCBI
2007
114views more  BMCBI 2007»
13 years 9 months ago
Gene models from ESTs (GeneModelEST): an application on the Solanum lycopersicum genome
Background: The structure annotation of a genome is based either on ab initio methodologies or on similaritiy searches versus molecules that have been already annotated. Ab initio...
Nunzio D'Agostino, Alessandra Traini, Luigi Frusci...
CPHYSICS
2011
267views Education» more  CPHYSICS 2011»
13 years 14 days ago
Fast alignment of a complex tracking detector using advanced track models
The inner silicon detector of the Compact Muon Solenoid experiment (CMS) at CERN’s LHC consists of 16 588 modules. Charged-particle tracks in the detector are used to improve th...
Volker Blobel, Claus Kleinwort, Frank Meier
WABI
2009
Springer
109views Bioinformatics» more  WABI 2009»
14 years 3 months ago
Fast Prediction of RNA-RNA Interaction
Regulatory antisense RNAs are a class of ncRNAs that regulate gene expression by prohibiting the translation of an mRNA by establishing stable interactions with a target sequence. ...
Raheleh Salari, Rolf Backofen, Süleyman Cenk ...
AAAI
2007
13 years 11 months ago
A Randomized String Kernel and Its Application to RNA Interference
String kernels directly model sequence similarities without the necessity of extracting numerical features in a vector space. Since they better capture complex traits in the seque...
Shibin Qiu, Terran Lane, Ljubomir J. Buturovic
CF
2008
ACM
13 years 11 months ago
Cell-SWat: modeling and scheduling wavefront computations on the cell broadband engine
This paper contributes and evaluates a model and a methodology for implementing parallel wavefront algorithms on the Cell Broadband Engine. Wavefront algorithms are vital in sever...
Ashwin M. Aji, Wu-chun Feng, Filip Blagojevic, Dim...