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» A Computational Model for RNA Multiple Structural Alignment.
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ISMB
2003
13 years 10 months ago
PSI: indexing protein structures for fast similarity search
We consider the problem of finding similarities in protein structure databases. Our techniques extract feature vectors on triplets of SSEs (Secondary Structure Elements). Later, ...
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Sing...
JCB
2007
97views more  JCB 2007»
13 years 8 months ago
Parsing Nucleic Acid Pseudoknotted Secondary Structure: Algorithm and Applications
Accurate prediction of pseudoknotted nucleic acid secondary structure is an important computational challenge. Prediction algorithms based on dynamic programming aim to find a st...
Baharak Rastegari, Anne Condon
CVPR
2006
IEEE
14 years 11 months ago
Aligning ASL for Statistical Translation Using a Discriminative Word Model
We describe a method to align ASL video subtitles with a closed-caption transcript. Our alignments are partial, based on spotting words within the video sequence, which consists o...
Ali Farhadi, David A. Forsyth
BMCBI
2007
113views more  BMCBI 2007»
13 years 9 months ago
Statistical power of phylo-HMM for evolutionarily conserved element detection
Background: An important goal of comparative genomics is the identification of functional elements through conservation analysis. Phylo-HMM was recently introduced to detect conse...
Xiaodan Fan, Jun Zhu, Eric E. Schadt, Jun S. Liu
ECCV
2006
Springer
14 years 18 days ago
Nonparametric Estimation of Multiple Structures with Outliers
Common problem encountered in the analysis of dynamic scene is the problem of simultaneous estimation of the number of models and their parameters. This problem becomes difficult a...
Wei Zhang, Jana Kosecká