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BMCBI
2008
103views more  BMCBI 2008»
13 years 7 months ago
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model
Background: Protein structure analysis and comparison are major challenges in structural bioinformatics. Despite the existence of many tools and algorithms, very few of them have ...
Mallika Veeramalai, Yuzhen Ye, Adam Godzik
WISE
2002
Springer
14 years 19 days ago
Discovering Associations in XML Data
—Knowledge inference from semi-structured data can utilize frequent sub structures, in addition to frequency of data items. In fact, the working assumption of the present study i...
Amnon Meisels, Michael Orlov, Tal Maor
NAR
2011
233views Computer Vision» more  NAR 2011»
12 years 10 months ago
ArachnoServer 2.0, an updated online resource for spider toxin sequences and structures
ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms....
Volker Herzig, David L. A. Wood, Felicity Newell, ...
LREC
2010
187views Education» more  LREC 2010»
13 years 9 months ago
How FrameSQL Shows the Japanese FrameNet Data
FrameSQL is a web-based application which the author (Sato, 2003; Sato 2008) created originally for searching the Berkeley FrameNet lexical database. FrameSQL now can handle the J...
Hiroaki Sato
BIBE
2003
IEEE
183views Bioinformatics» more  BIBE 2003»
14 years 1 months ago
Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
Ozgur Ozturk, Hakan Ferhatosmanoglu