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The BioGRID Interaction Database: 2011 update

13 years 5 months ago

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The Biological General Repository for Interaction Datasets (BioGRID) is a public database that archives and disseminates genetic and protein interaction data from model organisms ...

Chris Stark, Bobby-Joe Breitkreutz, Andrew Chatr-a...

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Id	Views	Title	Status

1	374	The BioGRID Interaction Database: 2011 update	claim
2	357	miRGator v2.0 : an integrated system for functional investigation of microRNAs	claim
3	340	CCDB: a curated database of genes involved in cervix cancer	claim
4	331	Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource	claim
5	330	Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera	claim
6	307	BRENDA, the enzyme information system in 2011	claim
7	305	CDD: a Conserved Domain Database for the functional annotation of proteins	claim
8	298	PolyQ: a database describing the sequence and domain context of polyglutamine repeats in proteins	claim
9	298	Indian genetic disease database	claim
10	290	AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies	claim
11	277	The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection	claim
12	276	GPCRDB: information system for G protein-coupled receptors	claim
13	274	A series of PDB related databases for everyday needs	claim
14	267	EcoCyc: a comprehensive database of Escherichia coli biology	claim
15	260	ASD: a comprehensive database of allosteric proteins and modulators	claim
16	259	PDBe: Protein Data Bank in Europe	claim
17	258	The RNA modification database, RNAMDB: 2011 update	claim
18	257	The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored	claim
19	256	ModBase, a database of annotated comparative protein structure models, and associated resources	claim
20	256	COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer	claim
21	253	tRNADB-CE 2011: tRNA gene database curated manually by experts	claim
22	252	BISC: Binary SubComplexes in proteins database	claim
23	251	The IMGT/HLA database	claim
24	248	NCBI GEO: archive for functional genomics data sets - 10 years on	claim
25	246	miRTarBase: a database curates experimentally validated microRNA-target interactions	claim
26	245	The Comparative Toxicogenomics Database: update 2011	claim
27	244	PROMISCUOUS: a database for network-based drug-repositioning	claim
28	241	PRIDB: a protein-RNA interface database	claim
29	238	COMBREX: a project to accelerate the functional annotation of prokaryotic genomes	claim
30	236	The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfish	claim
31	235	P2CS: a database of prokaryotic two-component systems	claim
32	234	The UCSC cancer genomics browser: update 2011	claim
33	233	ArachnoServer 2.0, an updated online resource for spider toxin sequences and structures	claim
34	233	TIARA: a database for accurate analysis of multiple personal genomes based on cross-technology	claim
35	232	REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila	claim
36	227	VnD: a structure-centric database of disease-related SNPs and drugs	claim
37	227	CADgene: a comprehensive database for coronary artery disease genes	claim
38	226	The International Nucleotide Sequence Database Collaboration	claim
39	225	Gramene database in 2010: updates and extensions	claim
40	225	PHOSIDA 2011: the posttranslational modification database	claim
41	225	IsoBase: a database of functionally related proteins across PPI networks	claim
42	224	KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data	claim
43	223	miRBase: integrating microRNA annotation and deep-sequencing data	claim
44	223	HitPredict: a database of quality assessed protein-protein interactions in nine species	claim
45	223	KUPS: constructing datasets of interacting and non-interacting protein pairs with associated attributions	claim
46	223	ODB: a database for operon organizations, 2011 update	claim
47	222	Effective - a database of predicted secreted bacterial proteins	claim
48	221	AGRIS: the Arabidopsis Gene Regulatory Information Server, an update	claim
49	219	SCLD: a stem cell lineage database for the annotation of cell types and developmental lineages	claim
50	218	Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations	claim
51	216	ChemProt: a disease chemical biology database	claim
52	216	dbDNV: a resource of duplicated gene nucleotide variants in human genome	claim
53	215	LSD: a leaf senescence database	claim
54	215	dbCRID: a database of chromosomal rearrangements in human diseases	claim
55	214	DAnCER: Disease-Annotated Chromatin Epigenetics Resource	claim
56	214	starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data	claim
57	214	IEDB-3D: structural data within the immune epitope database	claim
58	212	The Sequence Read Archive	claim
59	212	Phospho.ELM: a database of phosphorylation sites - update 2011	claim
60	212	UKPMC: a full text article resource for the life sciences	claim
61	211	mESAdb: microRNA Expression and Sequence Analysis Database	claim
62	211	DIMA 3.0: Domain Interaction Map	claim
63	209	REPAIRtoire - a database of DNA repair pathways	claim
64	209	CancerResource: a comprehensive database of cancer-relevant proteins and compound interactions supported by experimental knowledge	claim
65	208	The Pancreatic Expression database: 2011 update	claim
66	208	MIPS: curated databases and comprehensive secondary data resources in 2010	claim
67	208	The UCSC Genome Browser database: update 2011	claim
68	208	CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data	claim
69	208	Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics	claim
70	207	PSORTdb - an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea	claim
71	205	The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources	claim
72	204	CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins	claim
73	203	ViralZone: a knowledge resource to understand virus diversity	claim
74	203	Laminin database: a tool to retrieve high-throughput and curated data for studies on laminins	claim
75	202	PREX: PeroxiRedoxin classification indEX, a database of subfamily assignments across the diverse peroxiredoxin family	claim
76	201	Reactome: a database of reactions, pathways and biological processes	claim
77	199	RepTar: a database of predicted cellular targets of host and viral miRNAs	claim
78	199	FragmentStore - a comprehensive database of fragments linking metabolites, toxic molecules and drugs	claim
79	198	PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions	claim
80	197	AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species	claim
81	197	dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa	claim
82	196	UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions	claim
83	195	MitoGenesisDB: an expression data mining tool to explore spatio-temporal dynamics of mitochondrial biogenesis	claim
84	194	SUPERFAMILY 1.75 including a domain-centric gene ontology method	claim
85	194	GreenPhylDB v2.0: comparative and functional genomics in plants	claim
86	193	AREsite: a database for the comprehensive investigation of AU-rich elements	claim
87	191	The protein common interface database (ProtCID) - a comprehensive database of interactions of homologous proteins in multiple crystal forms	claim
88	191	ConsensusPathDB: toward a more complete picture of cell biology	claim
89	190	New tools and methods for direct programmatic access to the dbSNP relational database	claim
90	189	EDULISS: a small-molecule database with data-mining and pharmacophore searching capabilities	claim
91	188	PCDDB: the protein circular dichroism data bank, a repository for circular dichroism spectral and metadata	claim
92	188	ThYme: a database for thioester-active enzymes	claim
93	188	The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes	claim
94	188	NCBI Epigenomics: a new public resource for exploring epigenomic data sets	claim
95	187	The RNA helicase database	claim
96	186	TcoF-DB: dragon database for human transcription co-factors and transcription factor interacting proteins	claim
97	183	RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans	claim
98	183	IGRhCellID: integrated genomic resources of human cell lines for identification	claim
99	182	PAIR: the predicted Arabidopsis interactome resource	claim
100	179	The Protein Ontology: a structured representation of protein forms and complexes	claim
101	176	IUPHAR-DB: new receptors and tools for easy searching and visualization of pharmacological data	claim
102	172	NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data	claim
103	164	PCDB: a database of protein conformational diversity	claim
104	162	GlycomeDB - a unified database for carbohydrate structures	claim
105	162	BSDB: the biomolecule stretching database	claim
106	159	SuperSweet - a resource on natural and artificial sweetening agents	claim
107	158	CPLA 1.0: an integrated database of protein lysine acetylation	claim
108	158	T1DBase: update 2011, organization and presentation of large-scale data sets for type 1 diabetes research	claim
109	157	PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database	claim
110	153	MPromDb update 2010: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-seq experimental data	claim

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