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» A Database Platform for Bioinformatics
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WOB
2004
103views Bioinformatics» more  WOB 2004»
13 years 10 months ago
An I/O Device Driver for Bioinformatics Tools: the case for BLAST
There are many bioinformatics tools that deal with input/ output (I/O) issues by using filing systems from the most common operating systems, such as Linux or MS Windows. However, ...
Renato Mauro, Sérgio Lifschitz
APBC
2003
191views Bioinformatics» more  APBC 2003»
13 years 10 months ago
Oracle's Technology for Bioinformatics and Future Directions
The Oracle relational database management system, with object-oriented extensions and numerous applicationdriven enhancements, plays a critical role worldwide in managing the expl...
Bruce Blackwell, Siva Ravada
BIOCOMP
2006
13 years 10 months ago
Performance of Sequence Alignment Bioinformatics Applications on General Purpose Processors: A Case Study
- Aligning specific sequences against other known sequences in a database is a central aspect of bioinformatics. New experimental data being added continuously to these databases n...
Pradeep Nair, Eugene John
VLDB
2005
ACM
184views Database» more  VLDB 2005»
14 years 9 months ago
Rule-based workflow management for bioinformatics
We describe a data-centric software architecture for bioinformatics workflows and a rule-based workflow enactment system that uses declarative specifications of data dependences be...
John S. Conery, Julian Catchen, Michael Lynch
GCC
2006
Springer
14 years 19 days ago
UGE4B: An Universal Grid Environment for Bioinformatics Research
Recent years, grid technology has been used widely in the fields of scientific research. In this paper, we present an universal grid environment for Bioinformatics Research (UGE4B...
Gang Chen, Yongwei Wu, Weimin Zheng