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» A Database Platform for Bioinformatics
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BIOINFORMATICS
2002
123views more  BIOINFORMATICS 2002»
13 years 8 months ago
Making sense of microarray data distributions
Motivation: Typical analysis of microarray data has focused on spot by spot comparisons within a single organism. Less analysis has been done on the comparison of the entire distr...
David C. Hoyle, Magnus Rattray, Ray Jupp, Andy Bra...
BIOINFORMATICS
2010
250views more  BIOINFORMATICS 2010»
13 years 8 months ago
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
Summary: High-throughput RNA sequencing (RNA-seq) is rapidly emerging as a major quantitative transcriptome profiling platform. Here we present DEGseq, an R package to identify di...
Likun Wang, Zhixing Feng, Xi Wang, Xiaowo Wang, Xu...
IPPS
2008
IEEE
14 years 3 months ago
Supporting high performance bioinformatics flat-file data processing using indices
As an essential part of in vitro analysis, biological database query has become more and more important in the research process. A few challenges that are specific to bioinformat...
Xuan Zhang, Gagan Agrawal
FGCS
2007
108views more  FGCS 2007»
13 years 9 months ago
From bioinformatic web portals to semantically integrated Data Grid networks
We propose a semi-automated method for redeploying bioinformatic databases indexed in a Web portal as a decentralized, semantically integrated and service-oriented Data Grid. We g...
Adriana Budura, Philippe Cudré-Mauroux, Kar...
VLDB
2005
ACM
152views Database» more  VLDB 2005»
14 years 9 months ago
Composing, optimizing, and executing plans for bioinformatics web services
The emergence of a large number of bioinformatics datasets on the Internet has resulted in the need for flexible and efficient approaches to integrate information from multiple bio...
Snehal Thakkar, José Luis Ambite, Craig A. Knoblo...