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» A Database Platform for Bioinformatics
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TC
2010
13 years 7 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
BIOINFORMATICS
2011
13 years 22 days ago
RINQ: Reference-based Indexing for Network Queries
We consider the problem of similarity queries in biological network databases. Given a database of networks, similarity query returns all the database networks whose similarity (i...
Günhan Gülsoy, Tamer Kahveci
BMCBI
2011
13 years 4 months ago
LabKey Server: An open source platform for scientific data integration, analysis and collaboration
Background: Broad-based collaborations are becoming increasingly common among disease researchers. For example, the Global HIV Enterprise has united cross-disciplinary consortia t...
Elizabeth K. Nelson, Britt Piehler, Josh Eckels, A...
JANCL
2006
123views more  JANCL 2006»
13 years 9 months ago
Approximate databases: a support tool for approximate reasoning
This paper describes an experimental platform for approximate knowledge databases called the Approximate Knowledge Database (AKDB), based on a semantics inspired by rough sets. The...
Patrick Doherty, Martin Magnusson, Andrzej Szalas
CSB
2005
IEEE
142views Bioinformatics» more  CSB 2005»
14 years 2 months ago
BioMap: Discovering Schema Mapping Using Ontologies
Biologists currently devote significant time and effort searching information for their research. The wide diversity in terminology used inhibit effective computerized and manual...
Zoé Lacroix, Sumedha Gholba, Hervé M...