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» A Family of Incomplete Relational Database Models
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ISMB
1997
13 years 9 months ago
Identifying Chimerism in Proteins Using Hidden Markov Models of Codon Usage
Protein chimerism is a phenomenon involving the combination of multiple ancestral sequences into a single, multi-domain protein through evolution. We propose a novel method for de...
Lawrence Hunter, Barry Zeeberg
SAC
2010
ACM
14 years 2 months ago
Modeling cardinal directions in the 3D space with the objects interaction cube matrix
In GIS and spatial databases, cardinal directions are frequently used as selection and join criteria in query languages. However, most cardinal direction models are only able to h...
Tao Chen, Markus Schneider
DEBU
2008
125views more  DEBU 2008»
13 years 8 months ago
Querying XML in Timber
In this paper, we describe the TIMBER XML database system implemented at University of Michigan. TIMBER was one of the first native XML database systems, designed from the ground ...
Yuqing Wu, Stelios Paparizos, H. V. Jagadish
NAR
2002
80views more  NAR 2002»
13 years 7 months ago
PRINTS and PRINTS-S shed light on protein ancestry
The PRINTS database houses a collection of protein fingerprints. These may be used to make family and tentative functional assignments for uncharacterised sequences. The September...
Terri K. Attwood, Martin J. Blythe, Darren R. Flow...
BMCBI
2010
153views more  BMCBI 2010»
13 years 8 months ago
MimoSA: a system for minimotif annotation
Background: Minimotifs are short peptide sequences within one protein, which are recognized by other proteins or molecules. While there are now several minimotif databases, they a...
Jay Vyas, Ronald J. Nowling, Thomas Meusburger, Da...