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BMCBI
2006
137views more  BMCBI 2006»
13 years 7 months ago
A classification-based framework for predicting and analyzing gene regulatory response
Background: We have recently introduced a predictive framework for studying gene transcriptional regulation in simpler organisms using a novel supervised learning algorithm called...
Anshul Kundaje, Manuel Middendorf, Mihir Shah, Chr...
DASFAA
2005
IEEE
209views Database» more  DASFAA 2005»
14 years 1 months ago
PADS: Protein Structure Alignment Using Directional Shape Signatures
A novel approach for similarity search on the protein structure databases is proposed. PADS (Protein Alignment by Directional shape Signatures) incorporates the three dimensional ...
S. Alireza Aghili, Divyakant Agrawal, Amr El Abbad...
JCB
2006
124views more  JCB 2006»
13 years 7 months ago
The Average Common Substring Approach to Phylogenomic Reconstruction
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
Igor Ulitsky, David Burstein, Tamir Tuller, Benny ...
CDC
2010
IEEE
136views Control Systems» more  CDC 2010»
13 years 2 months ago
A distributed Newton method for Network Utility Maximization
Most existing work uses dual decomposition and subgradient methods to solve Network Utility Maximization (NUM) problems in a distributed manner, which suffer from slow rate of con...
Ermin Wei, Asuman E. Ozdaglar, Ali Jadbabaie
TSP
2008
151views more  TSP 2008»
13 years 7 months ago
Reduce and Boost: Recovering Arbitrary Sets of Jointly Sparse Vectors
The rapid developing area of compressed sensing suggests that a sparse vector lying in a high dimensional space can be accurately and efficiently recovered from only a small set of...
Moshe Mishali, Yonina C. Eldar