Abstract. Protein structural alignment is an indispensable tool used for many different studies in bioinformatics. Most structural alignment algorithms assume that the structural ...
Joe Dundas, T. Andrew Binkowski, Bhaskar DasGupta,...
Background: Protein structure analysis and comparison are major challenges in structural bioinformatics. Despite the existence of many tools and algorithms, very few of them have ...
We present a simple framework for dealing with search spaces consisting of permutations. To demonstrate its usefulness, we build upon it a simple (1 + 1)-evolutionary algorithm fo...
Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...
Steven David Prestwich, Desmond G. Higgins, Orla O...
We consider pixel labeling problems where the label set
forms a tree, and where the observations are also labels.
Such problems arise in feature-space analysis with a very
large...
Pedro Felzenszwalb, Gyula Pap, Eva Tardos, Ramin Z...