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    » A Flexible Algorithm for Pairwise Protein Structure Alignmen...
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    BMCBI
    2006
    139views more  BMCBI 2006»
    Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise li
    13 years 8 months ago
    Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise li
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    Background: Multiple sequence alignment (MSA) is a useful tool in bioinformatics. Although many MSA algorithms have been developed, there is still room for improvement in accuracy...
    Shinsuke Yamada, Osamu Gotoh, Hayato Yamana
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    RECOMB
    2007
    Springer
    160views Computational Biology» more  RECOMB 2007»
    Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology
    14 years 8 months ago
    Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology
    Download  web.mit.edu
    We describe an algorithm, IsoRank, for global alignment of two protein-protein interaction (PPI) networks. IsoRank aims to maximize the overall match between the two networks; in c...
    Rohit Singh, Jinbo Xu, Bonnie Berger
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    BMCBI
    2008
    87views more  BMCBI 2008»
    Protein structure search and local structure characterization
    13 years 8 months ago
    Protein structure search and local structure characterization
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    Background: Structural similarities among proteins can provide valuable insight into their functional mechanisms and relationships. As the number of available three-dimensional (3...
    Shih-Yen Ku, Yuh-Jyh Hu
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    RECOMB
    2003
    Springer
    125views Computational Biology» more  RECOMB 2003»
    Accurate detection of very sparse sequence motifs
    14 years 8 months ago
    Accurate detection of very sparse sequence motifs
    Download  www.molgen.mpg.de
    Protein sequence alignments are more reliable the shorter the evolutionary distance. Here, we align distantly related proteins using many closely spaced intermediate sequences as ...
    Andreas Heger, Michael Lappe, Liisa Holm
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    BMCBI
    2010
    103views more  BMCBI 2010»
    MTRAP: Pairwise sequence alignment algorithm by a new measure based on transition probability between two consecutive pairs of r
    13 years 8 months ago
    MTRAP: Pairwise sequence alignment algorithm by a new measure based on transition probability between two consecutive pairs of r
    Download  www.biomedcentral.com
    Background: Sequence alignment is one of the most important techniques to analyze biological systems. It is also true that the alignment is not complete and we have to develop it ...
    Toshihide Hara, Keiko Sato, Masanori Ohya
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