RECOMB 2007 - PDF Preprint Papers

RECOMB 2007 Annual Conference on Research in Computational Molecular Biology

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RECOMB
2007
Springer

290views Computational Biology» more RECOMB 2007»

Nucleosome Occupancy Information Improves de novo Motif Discovery

14 years 6 months ago

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A complete understanding of transcriptional regulatory processes in the cell requires identiﬁcation of transcription factor binding sites on a genomewide scale. Unfortunately, th...

Leelavati Narlikar, Raluca Gordân, Alexander...

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Id	Views	Title	Status

1	290	Nucleosome Occupancy Information Improves de novo Motif Discovery	claim
2	199	Beyond Galled Trees - Decomposition and Computation of Galled Networks	claim
3	190	Minimizing and Learning Energy Functions for Side-Chain Prediction	claim
4	177	Multi-break Rearrangements: From Circular to Linear Genomes	claim
5	169	Improving Inversion Median Computation Using Commuting Reversals and Cycle Information	claim
6	166	Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments	claim
7	160	Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology	claim
8	159	GIMscan: A New Statistical Method for Analyzing Whole-Genome Array CGH Data	claim
9	158	A Bayesian Model That Links Microarray mRNA Measurements to Mass Spectrometry Protein Measurements	claim
10	158	An Efficient and Accurate Graph-Based Approach to Detect Population Substructure	claim
11	155	Network Legos: Building Blocks of Cellular Wiring Diagrams	claim
12	144	QNet: A Tool for Querying Protein Interaction Networks	claim
13	143	Protein Conformational Flexibility Analysis with Noisy Data	claim
14	141	Comparative Analysis of Spatial Patterns of Gene Expression in Drosophila melanogaster Imaginal Discs	claim
15	140	Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking	claim
16	136	Parts of the Problem of Polyploids in Rearrangement Phylogeny	claim
17	135	Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences	claim
18	133	Association Mapping of Complex Diseases with Ancestral Recombination Graphs: Models and Efficient Algorithms	claim
19	131	Reconstructing the Topology of Protein Complexes	claim
20	131	Learning Gene Regulatory Networks via Globally Regularized Risk Minimization	claim
21	131	Evolution of Tandemly Arrayed Genes in Multiple Species	claim
22	130	Production-Passage-Time Approximation: A New Approximation Method to Accelerate the Simulation Process of Enzymatic Reactions	claim
23	129	Framework for Identifying Common Aberrations in DNA Copy Number Data	claim
24	126	Support Vector Training of Protein Alignment Models	claim
25	125	An Efficient Method for Dynamic Analysis of Gene Regulatory Networks and in silico Gene Perturbation Experiments	claim
26	125	Rearrangements in Genomes with Centromeres Part I: Translocations	claim
27	124	How to Achieve an Equivalent Simple Permutation in Linear Time	claim
28	122	Tools for Simulating and Analyzing RNA Folding Kinetics	claim
29	119	Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation	claim
30	117	A Feature-Based Approach to Modeling Protein-DNA Interactions	claim
31	113	Selecting Genomes for Reconstruction of Ancestral Genomes	claim
32	112	Reconstructing an Inversion History in the Anopheles Gambiae Complex	claim
33	106	A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications	claim
34	106	Inferring a Duplication, Speciation and Loss History from a Gene Tree (Extended Abstract)	claim
35	100	Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions	claim

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