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NAR
2006
119views more  NAR 2006»
13 years 7 months ago
HHsenser: exhaustive transitive profile search using HMM-HMM comparison
HHsenser is the first server to offer exhaustive intermediate profile searches, which it combines with pairwise comparison of hidden Markov models. Starting from a single protein ...
Johannes Söding, Michael Remmert, Andreas Bie...
RECOMB
2006
Springer
14 years 7 months ago
CONTRAlign: Discriminative Training for Protein Sequence Alignment
In this paper, we present CONTRAlign, an extensible and fully automatic framework for parameter learning and protein pairwise sequence alignment using pair conditional random field...
Chuong B. Do, Samuel S. Gross, Serafim Batzoglou
CIKM
2011
Springer
12 years 7 months ago
Semi-supervised multi-task learning of structured prediction models for web information extraction
Extracting information from web pages is an important problem; it has several applications such as providing improved search results and construction of databases to serve user qu...
Paramveer S. Dhillon, Sundararajan Sellamanickam, ...
BMCBI
2010
191views more  BMCBI 2010»
13 years 2 months ago
Molecular dynamics simulation studies and in vitro site directed mutagenesis of avian beta-defensin Apl_AvBD2
Background: Defensins comprise a group of antimicrobial peptides, widely recognized as important elements of the innate immune system in both animals and plants. Cationicity, rath...
Soja Saghar Soman, Krishnankutty Chandrika Sivakum...
KDD
2002
ACM
104views Data Mining» more  KDD 2002»
14 years 8 months ago
Generalization Methods in Bioinformatics
Protein secondary structure prediction and high-throughput drug screen data mining are two important applications in bioinformatics. The data is represented in sparse feature spac...
Steven Eschrich, Nitesh V. Chawla, Lawrence O. Hal...