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» A General Edit Distance between RNA Structures
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DEXAW
2006
IEEE
111views Database» more  DEXAW 2006»
14 years 1 months ago
Finding Syntactic Similarities Between XML Documents
Detecting structural similarities between XML documents has been the subject of several recent work, and the proposed algorithms mostly use tree edit distance between the correspo...
Davood Rafiei, Daniel L. Moise, Dabo Sun
CSB
2005
IEEE
192views Bioinformatics» more  CSB 2005»
14 years 1 months ago
RNAMute: RNA Secondary Structure Mutation Analysis Tool
RNAMute is an interactive web tool written in Java that calculates the secondary structure of all single point mutations, given an RNA sequence, and organizes them into categories...
Alexander Churkin, Ornit Elgad, Oshrat Petgho, Dan...
BIOINFORMATICS
2011
13 years 2 months ago
All-atom knowledge-based potential for RNA structure prediction and assessment
Motivation: Over the recent years, the vision that RNA simply serves as information transfer molecule has dramatically changed. The study of the sequence/structure/function relati...
Emidio Capriotti, Tomás Norambuena, Marc A....
ICANNGA
2009
Springer
130views Algorithms» more  ICANNGA 2009»
14 years 2 months ago
String Distances and Uniformities
Abstract. The Levenstein or edit distance was developed as a metric for calculating distances between character strings. We are looking at weighting the different edit operations (...
David W. Pearson, Jean-Christophe Janodet
SPE
2008
91views more  SPE 2008»
13 years 7 months ago
A multiple layer model to compare RNA secondary structures
composed of various graphs linked together by relations of abstraction/refinement. The new structure is useful for representing information that can be described at t levels of abs...
Julien Allali, Marie-France Sagot