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» A Generalization of Automatic Sequences
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RECOMB
2009
Springer
14 years 10 months ago
Simultaneous Alignment and Folding of Protein Sequences
Abstract. Accurate comparative analysis tools for low-homology proteins remains a difficult challenge in computational biology, especially sequence alignment and consensus folding ...
Bonnie Berger, Charles W. O'Donnell, Jér&oc...
GECCO
2005
Springer
154views Optimization» more  GECCO 2005»
14 years 3 months ago
Genetic algorithms using low-discrepancy sequences
The random number generator is one of the important components of evolutionary algorithms (EAs). Therefore, when we try to solve function optimization problems using EAs, we must ...
Shuhei Kimura, Koki Matsumura
DAGSTUHL
2006
13 years 11 months ago
The optimal sequence compression
This paper presents the optimal compression for sequences with undefined values. Let we have (N -m) undefined and m defined positions in the boolean sequence V of length N. The se...
Alexander E. Andreev
ICSE
2005
IEEE-ACM
14 years 10 months ago
Object naming analysis for reverse-engineered sequence diagrams
UML sequence diagrams are commonly used to represent object interactions in software systems. This work considers the problem of extracting UML sequence diagrams from existing cod...
Atanas Rountev, Beth Harkness Connell
GECCO
2006
Springer
159views Optimization» more  GECCO 2006»
14 years 1 months ago
Identification of weak motifs in multiple biological sequences using genetic algorithm
Recognition of motifs in multiple unaligned sequences provides an insight into protein structure and function. The task of discovering these motifs is very challenging because mos...
Topon Kumar Paul, Hitoshi Iba