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» A Generalization of Automatic Sequences
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BMCBI
2010
72views more  BMCBI 2010»
13 years 8 months ago
Potentials 'R'Us web-server for protein energy estimations with coarse-grained knowledge-based potentials
Background: Knowledge-based potentials have been widely used in the last 20 years for fold recognition, protein structure prediction from amino acid sequence, ligand binding, prot...
Yaping Feng, Andrzej Kloczkowski, Robert L. Jernig...
FLOPS
2008
Springer
13 years 10 months ago
A Generalization of the Folding Rule for the Clark-Kunen Semantics
Abstract. In this paper, we propose more flexible applicability conditions for the folding rule that increase the power of existing unfold/fold systems for normal logic programs. O...
Javier Álvez, Paqui Lucio
BMCBI
2007
124views more  BMCBI 2007»
13 years 8 months ago
CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats
Background: Clustered Regularly Interspaced Palindromic Repeats (CRISPRs) are a novel type of direct repeat found in a wide range of bacteria and archaea. CRISPRs are beginning to...
Charles Bland, Teresa L. Ramsey, Fareedah Sabree, ...
JSAI
2005
Springer
14 years 2 months ago
On Generalization and Subsumption for Ordered Clauses
: In this paper, we introduce ordered clauses as defined a sequence of literals, and investigate the properties of generalizations for ordered clauses. Furthermore, we show that t...
Megumi Kuwabara, Takeshi Ogawa, Kouichi Hirata, Ma...
BMCBI
2007
105views more  BMCBI 2007»
13 years 8 months ago
Finding regulatory elements and regulatory motifs: a general probabilistic framework
Over the last two decades a large number of algorithms has been developed for regulatory motif finding. Here we show how many of these algorithms, especially those that model bind...
Erik van Nimwegen