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CBMS
2005
IEEE
13 years 9 months ago
Biclustering of Expression Data Using Simulated Annealing
In gene expression data a bicluster is a subset of genes and a subset of conditions which show correlating levels of expression. However, the problem of finding significant biclu...
Kenneth Bryan, Padraig Cunningham, Nadia Bolshakov...
BMCBI
2007
139views more  BMCBI 2007»
13 years 7 months ago
Significance analysis of microarray transcript levels in time series experiments
Background: Microarray time series studies are essential to understand the dynamics of molecular events. In order to limit the analysis to those genes that change expression over ...
Barbara Di Camillo, Gianna Toffolo, Sreekumaran K....
BMCBI
2008
97views more  BMCBI 2008»
13 years 7 months ago
MCM-test: a fuzzy-set-theory-based approach to differential analysis of gene pathways
Background: Gene pathway can be defined as a group of genes that interact with each other to perform some biological processes. Along with the efforts to identify the individual g...
Lily R. Liang, Vinay Mandal, Yi Lu, Deepak Kumar
PRIB
2009
Springer
147views Bioinformatics» more  PRIB 2009»
14 years 2 months ago
Cross-Platform Analysis with Binarized Gene Expression Data
Abstract. With widespread use of microarray technology as a potential diagnostics tool, the comparison of results obtained from the use of different platforms is of interest. When...
Salih Tuna, Mahesan Niranjan
ICML
2009
IEEE
14 years 8 months ago
Partially supervised feature selection with regularized linear models
This paper addresses feature selection techniques for classification of high dimensional data, such as those produced by microarray experiments. Some prior knowledge may be availa...
Thibault Helleputte, Pierre Dupont