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BMCBI
2010
153views more  BMCBI 2010»
13 years 8 months ago
PPLook: an automated data mining tool for protein-protein interaction
Background: Extracting and visualizing of protein-protein interaction (PPI) from text literatures are a meaningful topic in protein science. It assists the identification of inter...
Shao-Wu Zhang, Yao-Jun Li, Li Xia, Quan Pan
BMCBI
2007
93views more  BMCBI 2007»
13 years 7 months ago
SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition
Background: Predicting a protein’s structural class from its amino acid sequence is a fundamental problem in computational biology. Much recent work has focused on developing ne...
Iain Melvin, Eugene Ie, Rui Kuang, Jason Weston, W...
BMCBI
2005
131views more  BMCBI 2005»
13 years 7 months ago
Functional annotation by identification of local surface similarities: a novel tool for structural genomics
Background: Protein function is often dependent on subsets of solvent-exposed residues that may exist in a similar three-dimensional configuration in non homologous proteins thus ...
Fabrizio Ferrè, Gabriele Ausiello, Andreas ...
ISCAS
2005
IEEE
142views Hardware» more  ISCAS 2005»
14 years 1 months ago
Hardware-based support vector machine classification in logarithmic number systems
—Support Vector Machines are emerging as a powerful machine-learning tool. Logarithmic Number Systems (LNS) utilize the property of logarithmic compression for numerical operatio...
Faisal M. Khan, Mark G. Arnold, William M. Potteng...
SAC
2009
ACM
14 years 2 months ago
HIVSetSubtype: software for subtype classification of HIV-1 sequences
An automated web based tool for assigning HIV-1 pure and recombinant subtypes within unaligned sequences is presented. The system combines the BLAST search algorithm and the recom...
Luciano Vieira de Araújo, Sabri S. Sanabani...