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» A Graph Theoretic Approach to Protein Structure Selection
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BMCBI
2008
116views more  BMCBI 2008»
13 years 8 months ago
Impact of residue accessible surface area on the prediction of protein secondary structures
Background: The problem of accurate prediction of protein secondary structure continues to be one of the challenging problems in Bioinformatics. It has been previously suggested t...
Amir Momen-Roknabadi, Mehdi Sadeghi, Hamid Pezeshk...
ICDE
2006
IEEE
146views Database» more  ICDE 2006»
14 years 10 months ago
Query Selection Techniques for Efficient Crawling of Structured Web Sources
The high quality, structured data from Web structured sources is invaluable for many applications. Hidden Web databases are not directly crawlable by Web search engines and are on...
Ping Wu, Ji-Rong Wen, Huan Liu, Wei-Ying Ma
NIPS
2008
13 years 10 months ago
Predicting the Geometry of Metal Binding Sites from Protein Sequence
Metal binding is important for the structural and functional characterization of proteins. Previous prediction efforts have only focused on bonding state, i.e. deciding which prot...
Paolo Frasconi, Andrea Passerini
BMCBI
2007
265views more  BMCBI 2007»
13 years 8 months ago
Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing
Background: Detecting groups of functionally related proteins from their amino acid sequence alone has been a long-standing challenge in computational genome research. Several clu...
Tobias Wittkop, Jan Baumbach, Francisco P. Lobo, S...
CPM
2004
Springer
156views Combinatorics» more  CPM 2004»
14 years 2 months ago
A Computational Model for RNA Multiple Structural Alignment.
Abstract. This paper addresses the problem of aligning multiple sequences of non-coding RNA genes. We approach this problem with the biologically motivated paradigm that scoring of...
Eugene Davydov, Serafim Batzoglou