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» A Graph Theoretic Approach to Protein Structure Selection
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BMCBI
2007
168views more  BMCBI 2007»
13 years 8 months ago
Benchmarking consensus model quality assessment for protein fold recognition
Background: Selecting the highest quality 3D model of a protein structure from a number of alternatives remains an important challenge in the field of structural bioinformatics. M...
Liam J. McGuffin
SGAI
2010
Springer
13 years 3 months ago
A Structural Approach to Sensor Placement based on Symbolic Compilation of the Model
: In the present paper we address the problem of computing the Minimal Additional Sensor Sets (MASS) that guarantee a desired level of diagnostic discrimination for a system. Recen...
Gianluca Torta, Pietro Torasso
BMCBI
2006
101views more  BMCBI 2006»
13 years 8 months ago
Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives
Background: Predicting residues' contacts using primary amino acid sequence alone is an important task that can guide 3D structure modeling and can verify the quality of the ...
Petras J. Kundrotas, Emil Alexov
BMCBI
2006
137views more  BMCBI 2006»
13 years 8 months ago
A maximum likelihood framework for protein design
Background: The aim of protein design is to predict amino-acid sequences compatible with a given target structure. Traditionally envisioned as a purely thermodynamic question, thi...
Claudia L. Kleinman, Nicolas Rodrigue, Céci...
ICTAI
2009
IEEE
13 years 6 months ago
A Generalized Cyclic-Clustering Approach for Solving Structured CSPs
We propose a new method for solving structured CSPs which generalizes and improves the Cyclic-Clustering approach [4]. First, the cutset and the tree-decomposition of the constrai...
Cédric Pinto, Cyril Terrioux