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BMCBI
2008
123views more  BMCBI 2008»
13 years 7 months ago
Functional module detection by functional flow pattern mining in protein interaction networks
eraction networks. In this abstract, we extend this approach by mining functional flow patterns for the purpose of detecting small-sized modules for specific functions. Methods Our...
Young-Rae Cho, Lei Shi, Aidong Zhang
CIKM
2009
Springer
14 years 2 months ago
Reducing the risk of query expansion via robust constrained optimization
We introduce a new theoretical derivation, evaluation methods, and extensive empirical analysis for an automatic query expansion framework in which model estimation is cast as a r...
Kevyn Collins-Thompson
BMCBI
2005
94views more  BMCBI 2005»
13 years 7 months ago
A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage
Background: The allele frequencies of single-nucleotide polymorphisms (SNPs) are needed to select an optimal subset of common SNPs for use in association studies. Sequence-based m...
Jianmin Wang, Xiaoqiu Huang
SIGIR
2009
ACM
14 years 2 months ago
Addressing morphological variation in alphabetic languages
The selection of indexing terms for representing documents is a key decision that limits how effective subsequent retrieval can be. Often stemming algorithms are used to normaliz...
Paul McNamee, Charles K. Nicholas, James Mayfield
BMCBI
2008
116views more  BMCBI 2008»
13 years 7 months ago
Impact of residue accessible surface area on the prediction of protein secondary structures
Background: The problem of accurate prediction of protein secondary structure continues to be one of the challenging problems in Bioinformatics. It has been previously suggested t...
Amir Momen-Roknabadi, Mehdi Sadeghi, Hamid Pezeshk...