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CDC
2010
IEEE
141views Control Systems» more  CDC 2010»
13 years 3 months ago
Hybrid moment computation algorithm for biochemical reaction networks
Moment computation is essential to the analysis of stochastic kinetic models of biochemical reaction networks. It is often the case that the moment evolution, usually the first and...
Yun-Bo Zhao, Jongrae Kim, João Pedro Hespan...
ICLP
2009
Springer
14 years 9 months ago
Constraint Based Languages for Biological Reactions
In this paper, we study the modelization of biochemical reaction by using concurrent constraint programming idioms. In particular we will consider the stochastic concurrent constra...
Marco Bottalico, Stefano Bistarelli
BMCBI
2010
191views more  BMCBI 2010»
13 years 8 months ago
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
Background: Genome-scale metabolic reconstructions under the Constraint Based Reconstruction and Analysis (COBRA) framework are valuable tools for analyzing the metabolic capabili...
Jan Schellenberger, Junyoung O. Park, Tom M. Conra...
ICRA
2007
IEEE
108views Robotics» more  ICRA 2007»
14 years 2 months ago
Locating a Circular Biochemical Source: Modeling and Control
— This paper applies the modified Fisher Information Matrix (FIM) motion algorithm previously proposed by the authors to the task of locating a circular biochemical source. We d...
Panos Tzanos, Milos Zefran
BMCBI
2005
156views more  BMCBI 2005»
13 years 8 months ago
A new dynamical layout algorithm for complex biochemical reaction networks
Background: To study complex biochemical reaction networks in living cells researchers more and more rely on databases and computational methods. In order to facilitate computatio...
Katja Wegner, Ursula Kummer