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ALIFE
1999
13 years 8 months ago
An Approach to Biological Computation: Unicellular Core-Memory Creatures Evolved Using Genetic Algorithms
A novel machine language genetic programming system that uses one-dimensional core memories is proposed and simulated. The core is compared to a biochemical reaction space, and in ...
Hikeaki Suzuki
ACTA
2006
154views more  ACTA 2006»
13 years 8 months ago
Solving HPP and SAT by P Systems with Active Membranes and Separation Rules
The P systems (or membrane systems) are a class of distributed parallel computing devices of a biochemical type, where membrane division is the frequently investigated way for obta...
Linqiang Pan, Artiom Alhazov
CDC
2010
IEEE
161views Control Systems» more  CDC 2010»
13 years 3 months ago
Circadian system modeling and phase control
Circadian rhythms are biological processes found in all living organisms, from plants to insects to mammals that repeat with a period close to, but not exactly, 24 hours. In the ab...
Jiaxiang Zhang, Andrew Bierman, John T. Wen, Agung...
FM
2009
Springer
138views Formal Methods» more  FM 2009»
14 years 3 months ago
What Can Formal Methods Bring to Systems Biology?
This position paper argues that the operational modelling approaches from the formal methods community can be applied fruitfully within the systems biology domain. The results can ...
Nicola Bonzanni, K. Anton Feenstra, Wan Fokkink, E...
BIBE
2007
IEEE
149views Bioinformatics» more  BIBE 2007»
14 years 18 days ago
XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular Complexes
Multi-state molecules and multi-component complexes are commonly involved in cellular signaling. Accounting for molecules that have multiple potential states, such as a protein tha...
Michael L. Blinov, Ion I. Moraru