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» A Massively Parallel Architecture for Bioinformatics
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ASAP
2007
IEEE
122views Hardware» more  ASAP 2007»
14 years 2 months ago
Parallelizing HMMER for Hardware Acceleration on FPGAs
Profile based Hidden Markov Model is a widely used tool in bioinformatics. While being very valuable to biologists, it is extremely compute intensive and suffers from prohibitive...
Steven Derrien, Patrice Quinton
CF
2009
ACM
14 years 3 months ago
Quantitative analysis of sequence alignment applications on multiprocessor architectures
The exponential growth of databases that contains biological information (such as protein and DNA data) demands great efforts to improve the performance of computational platforms...
Friman Sánchez, Alex Ramírez, Mateo ...
VLDB
1998
ACM
95views Database» more  VLDB 1998»
14 years 20 days ago
The National Medical Knowledge Bank
This paper describes a massively parallel object relational (O/R) database used in an advanced development program to create a comprehensive medical information system called the ...
Warren Sterling
IPPS
2007
IEEE
14 years 2 months ago
Exploring a Multithreaded Methodology to Implement a Network Communication Protocol on the Cyclops-64 Multithreaded Architecture
The IBM Cyclops-64 (C64) chip employs a multithreaded architecture that integrates a large number of hardware thread units on a single chip. A cellular supercomputer is being deve...
Ge Gan, Ziang Hu, Juan del Cuvillo, Guang R. Gao
IPPS
2007
IEEE
14 years 2 months ago
A Flexible Resource Management Architecture for the Blue Gene/P Supercomputer
Blue Gene R /P is a massively parallel supercomputer intended as the successor to Blue Gene/L. It leverages much of the existing architecture of its predecessor to provide scalabi...
Sam Miller, Mark Megerian, Paul Allen, Tom Budnik