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» A Mechanization of Phylogenetic Trees
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CSB
2005
IEEE
130views Bioinformatics» more  CSB 2005»
14 years 4 months ago
TreeRefiner: A Tool for Refining a Multiple Alignment on a Phylogenetic Tree
We present TreeRefiner, a tool for refining multiple alignments of biological sequences. Given a multiple alignment, a phylogenetic tree, and scoring parameters as input, TreeRefi...
Aswath Manohar, Serafim Batzoglou
NAR
2006
91views more  NAR 2006»
13 years 10 months ago
TreeFam: a curated database of phylogenetic trees of animal gene families
TreeFam is a database of phylogenetic trees of gene families found in animals. It aims to develop a curated resource that presents the accurate evolutionary his20 tory of all anim...
Heng Li, Avril Coghlan, Jue Ruan, Lachlan James M....
WABI
2004
Springer
109views Bioinformatics» more  WABI 2004»
14 years 4 months ago
Online Consensus and Agreement of Phylogenetic Trees
Computational heuristics are the primary methods for reconstruction of phylogenetic trees on large datasets. Most large-scale phylogenetic analyses produce numerous trees that are ...
Tanya Y. Berger-Wolf
TKDE
2008
153views more  TKDE 2008»
13 years 10 months ago
Discovering Frequent Agreement Subtrees from Phylogenetic Data
We study a new data mining problem concerning the discovery of frequent agreement subtrees (FASTs) from a set of phylogenetic trees. A phylogenetic tree, or phylogeny, is an unorde...
Sen Zhang, Jason Tsong-Li Wang